schema preferences are a syntactical convenience, ie, they loop through the objects in the schema and set the object level preferences. There is no "schema-level" repository of preferences as such.
eg
SQL> exec dbms_stats.set_schema_prefs('scott','incremental','true')
PL/SQL procedure successfully completed.
SQL> select dbms_stats.get_prefs('incremental','scott','emp') from dual;
DBMS_STATS.GET_PREFS('INCREMENTAL','SCOTT','EMP')
------------------------------------------------------------------------------------------
TRUE
1 row selected.
SQL> create table scott.new_table ( x int );
Table created.
SQL> select dbms_stats.get_prefs('incremental','scott','new_table') from dual;
DBMS_STATS.GET_PREFS('INCREMENTAL','SCOTT','NEW_TABLE')
------------------------------------------------------------------------------------------
FALSE
1 row selected.
Because NEW_TAB was created AFTER we set the schema preference (which really just set it for each object in the scott schema that existed when we called it)